cvasl package

Submodules

• cvasl.carve module
  • DirectorySource
    • DirectorySource.get_tag()
    • DirectorySource.items()
  • GlobSource
    • GlobSource.get_tag()
    • GlobSource.items()
  • MetadataHelper
    • MetadataHelper.fetch_image()
    • MetadataHelper.fetch_metadata()
  • MultiSource
    • MultiSource.get_tag()
    • MultiSource.items()
  • SimpleITKDicomReader
    • SimpleITKDicomReader.date_fields
    • SimpleITKDicomReader.dicom_date_to_date()
    • SimpleITKDicomReader.dicom_time_to_time()
    • SimpleITKDicomReader.exclude_fields
    • SimpleITKDicomReader.read()
    • SimpleITKDicomReader.time_fields
  • rename_file()
  • rip_out_array_sitk()
• cvasl.cli module
  • common()
  • config_override()
  • main()
  • make_parser()
• cvasl.file_handler module
  • Config
    • Config.default_layout
    • Config.default_locations
    • Config.from_file()
    • Config.get_directory()
    • Config.load()
    • Config.no_file()
    • Config.parse()
    • Config.parse_overrides()
    • Config.pprint()
    • Config.required_directories
    • Config.usage()
    • Config.validate()
  • extract_common_columns()
  • find_where_column()
  • hash_folder()
  • hash_rash()
  • intersect_all()
  • make_columns()
  • unduplicate_dfs()
• cvasl.harmony module
  • compare_harm_multi_site_violins()
  • compare_harm_one_site_violins()
  • increment_keys()
  • log_out_columns()
  • make_topper()
  • negative_harm_outcomes()
  • prep_for_neurocombat()
  • prep_for_neurocombat_5way()
  • show_diff_on_var()
  • show_diff_on_var3()
  • show_diff_on_var5()
  • split_frame_half_balanced_by_column()
  • top_and_bottom_by_column()
• cvasl.mold module
  • NormedSliceViewer
    • NormedSliceViewer.plot_slice()
    • NormedSliceViewer.transpose()
  • SliceViewer
    • SliceViewer.plot_slice()
    • SliceViewer.transpose()
  • debias_folder()
  • n4_debias_sitk()
  • save_preprocessed()
• cvasl.seperated module
  • avg_k_folds()
  • bin_dataset()
  • check_identical_columns()
  • check_sex_dimorph_expectations()
  • concat_double_header()
  • derived_function()
  • drop_columns_folder()
  • drop_y()
  • find_original_y_values()
  • find_outliers_by_list()
  • folder_chain_out_columns()
  • generate_transformation_matrix()
  • make_log_file()
  • make_log_folder()
  • plot_2on2_df()
  • polyfit_and_show()
  • polyfit_second_degree_to_df()
  • preprocess()
  • pull_off_unnamed_column()
  • recode_sex()
  • recode_sex_folder()
  • recode_sex_to_numeric()
  • relate_columns_graphs()
  • relate_columns_graphs_numeric()
  • relate_columns_graphs_two_dfs()
  • static_bin_age()
  • stratified_cat_and_cont_categories_shuffle_split()
  • stratified_one_category_shuffle_split()
• cvasl.vendor package
  • Subpackages
    • cvasl.vendor.comscan package
      • Submodules
      • cvasl.vendor.comscan.clustering module
      • cvasl.vendor.comscan.neurocombat module
      • cvasl.vendor.comscan.nifti module
      • cvasl.vendor.comscan.utils module
      • Module contents
    • cvasl.vendor.neurocombat package
      • Submodules
      • cvasl.vendor.neurocombat.neurocombat module
      • Module contents
    • cvasl.vendor.open_nested_combat package
      • Submodules
      • cvasl.vendor.open_nested_combat.nest module
      • Module contents
  • Module contents

Module contents